PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG565400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 584aa    MW: 62986.6 Da    PI: 5.3491
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG565400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS314.81.9e-961775822374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPi 90 
                           +lLlecA+av+++d +++q+l++ l+elasp+gd  q+la yf+ +L arl+ s++++ ++l++ +++++ s +++  + l f+e+sP+
  Pavir.2NG565400.1.p 177 SQLLLECARAVAARDSQRVQQLMWMLNELASPYGDVEQKLANYFLPGLFARLTASGPRTLRTLAAASDRNT-SFDSTRRTALrFQELSPW 265
                          589************************************************************99888744.44444444446******* PP

                 GRAS  91 lkfshltaNqaIleavege.......ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.....skeeleetgerLak 167
                            f+h++aN aIle++ ++       +r Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v+s++++      ++ ++e+g+r++k
  Pavir.2NG565400.1.p 266 SSFGHVAANGAILESFLEAaaassepQRFHILDLSNTFCTQWPTLLEALATRSaDDTPHLSITTVVSAAPSaptaaVQRVMREIGQRMEK 355
                          **************987766667778999************************889***********988889999999*********** PP

                 GRAS 168 fAeelgvpfefnvlvak.rledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nse. 251
                          fA+ +gvpf+f+++++  +l++l+l++L+++      a+aVn+v +l  ++  ++  +  rd++ + +++l P+vv+vve+ead+   + 
  Pavir.2NG565400.1.p 356 FARLMGVPFSFRAVHHAgDLAELDLDALDLRDggaTTAVAVNCVNSLRGVV--PGGARR-RDAFTSSLRRLDPRVVTVVEEEADLvA-Sd 441
                          *************97767**************888889************9..555555.99**********************954.44 PP

                 GRAS 252 .............sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvp 328
                                        Fl+ f e l+++sa +dsle+++p++s+er  +Er   gr+iv++v+c  +e+ er+et+++W +r+++aGF+pv+
  Pavir.2NG565400.1.p 442 pgaseeqdgdteaAFLKVFGEGLRFFSAYMDSLEESFPKTSNERLALERG-AGRAIVDLVSCPASESMERRETAASWARRMRSAGFSPVA 530
                          8999**********************************************.*************************************** PP

                 GRAS 329 lsekaakqaklllrkvksdgyrveee.......sgslvlgWkdrpLvsvSaWr 374
                          +se++a+++++llr++  +g+++ +         + ++l Wk++pLv++SaWr
  Pavir.2NG565400.1.p 531 FSEDVADDVRSLLRRYR-EGWSMRDAclddsapGAGVFLAWKEQPLVWASAWR 582
                          *****************.88888844445555466777**************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.466150556IPR005202Transcription factor GRAS
PfamPF035146.7E-94177582IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MDTLFRLVSL QASEQQQQSA SYNSRSTTSS GSRSSSHQTN ASYNYYYHSN SSGGGGQYYY  60
GQQHQQYYLE PYQQEECGNA HHLYMDEDFS SSSSSRQHFH SHGAAVQPPT SSVATAPTPP  120
LSTSSTAAGA AHALFESADL SFPPDLNLDF SSPASSSGGG AASSAALGGG GGGRWASQLL  180
LECARAVAAR DSQRVQQLMW MLNELASPYG DVEQKLANYF LPGLFARLTA SGPRTLRTLA  240
AASDRNTSFD STRRTALRFQ ELSPWSSFGH VAANGAILES FLEAAAASSE PQRFHILDLS  300
NTFCTQWPTL LEALATRSAD DTPHLSITTV VSAAPSAPTA AVQRVMREIG QRMEKFARLM  360
GVPFSFRAVH HAGDLAELDL DALDLRDGGA TTAVAVNCVN SLRGVVPGGA RRRDAFTSSL  420
RRLDPRVVTV VEEEADLVAS DPGASEEQDG DTEAAFLKVF GEGLRFFSAY MDSLEESFPK  480
TSNERLALER GAGRAIVDLV SCPASESMER RETAASWARR MRSAGFSPVA FSEDVADDVR  540
SLLRRYREGW SMRDACLDDS APGAGVFLAW KEQPLVWASA WRP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-211785826375GRAS family transcription factor containing p
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.82640.0callus| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0673280.0BT067328.1 Zea mays full-length cDNA clone ZM_BFc0012E13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958171.10.0PREDICTED: protein SHORT-ROOT 1
SwissprotQ8H2X80.0SHR1_ORYSJ; Protein SHORT-ROOT 1
TrEMBLK3ZRR60.0K3ZRR6_SETIT; Uncharacterized protein
STRINGSi029296m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-140GRAS family protein